SDS Master Index

Quick navigation for the Software Design Specification (34 documents)

By Concern

Authentication & Security

Topic	Document	Section
Native login flow	sds-05-security-architecture.md	§2
SAML/SSO federation	sds-05-security-architecture.md	§2.5
MFA enrollment	domains/sds-domain-usermgmt.md	§5
Role-based access	sds-05-security-architecture.md	§3
Session management	sds-05-security-architecture.md	§4
Audit logging	domains/sds-domain-audit.md	§5

Data Processing & Analysis

Topic	Document	Section
Run file import	domains/sds-domain-fileimport.md	§5
Rule execution pipeline	domains/sds-domain-analytics.md	§5
Combined outcomes	rules/sds-rules-combine-outcomes.md	§4
Westgard QC	rules/sds-rules-qc.md	§4
Error code generation	domains/sds-domain-audit.md	§3

Configuration

Topic	Document	Section
Kit configuration	domains/sds-domain-kitcfg.md	§3-5
Client settings	reference/sds-ref-config.md	§2
Environment variables	reference/sds-ref-config.md	§5
Feature toggles	domains/sds-domain-kitcfg.md	§5.5

Rules Engine

Topic	Document	Section
Rule framework	rules/sds-rules-engine.md	§2-4
Classification rules	rules/sds-rules-classification.md	§4
Inhibition rules	rules/sds-rules-inhibition.md	§4
Quantification rules	rules/sds-rules-quantification.md	§4
QC/Westgard rules	rules/sds-rules-qc.md	§4

Reporting

Topic	Document	Section
Trends reports	domains/sds-domain-reports.md	§5.2
Run reports	domains/sds-domain-runrpt.md	§5
LIMS export	domains/sds-domain-reports.md	§5

User Interface

Topic	Document	Section
Global UI patterns	domains/sds-domain-globalui.md	§5
Tables & filtering	domains/sds-domain-tables.md	§5
Notifications	domains/sds-domain-notif.md	§5

By Document Tier

Tier 1: System-Level (6 documents)

Document	Purpose
sds-01-introduction.md	Template, conventions, domain boundaries
sds-02-system-context.md	External actors, integration points
sds-03-architecture-overview.md	Layer diagram, tech stack, patterns
sds-04-data-architecture.md	Database strategy, entity model
sds-05-security-architecture.md	Auth, authz, audit
sds-06-cross-cutting.md	Logging, errors, caching, queues

Tier 2: Domain Design (14 documents)

Document	Domains Covered	Character
domains/sds-domain-analytics.md	ANALYTICS, ANALYZER, PROGRESS	Stateful
domains/sds-domain-audit.md	AUDIT, ERRORCODES	Config-heavy
domains/sds-domain-configio.md	CONFIGIO	Integration
domains/sds-domain-fileimport.md	FILEIMPORT, UPLOAD	Integration
domains/sds-domain-globalui.md	GLOBALUI, UI, KEYBOARD	Thin orchestration
domains/sds-domain-kitcfg.md	KITCFG	Config-heavy
domains/sds-domain-notif.md	NOTIF	Thin orchestration
domains/sds-domain-reanalyze.md	REANALYZE, HELP	Algorithmic
domains/sds-domain-reports.md	REPORTS, PRINT	Thin orchestration
domains/sds-domain-runfile.md	RUNFILE	Thin orchestration
domains/sds-domain-runrpt.md	RUNRPT, COMMENTS	Stateful
domains/sds-domain-settings.md	SITE, CLIENTCFG, USERSET	Config-heavy
domains/sds-domain-tables.md	TABLES, FILTERS	Thin orchestration
domains/sds-domain-usermgmt.md	USERMGMT	Stateful

Tier 2: Rule Design (8 documents)

Document	Rules Covered
rules/sds-rules-engine.md	Framework, orchestration
rules/sds-rules-classification.md	WDCLS, WDCT, AMB, THRESHOLD
rules/sds-rules-combine-outcomes.md	COMBOUT, multi-mix
rules/sds-rules-inhibition.md	INH, PICQUAL, SYSTEMIC
rules/sds-rules-outcome.md	Sigmoid, NEC, BPEC, CC
rules/sds-rules-qc.md	Westgard, Fluorescence
rules/sds-rules-quantification.md	RQUANT, STDQT, RQUAL
rules/sds-rules-specialized.md	WC (deprecated), WT, ADJ, RWAC

Tier 3: Reference (4 documents)

Document	Content
reference/sds-ref-api.md	HTTP endpoint catalog
reference/sds-ref-config.md	Configuration options, env vars
reference/sds-ref-database.md	Table dictionary, relationships
reference/sds-ref-glossary.md	Terminology definitions

Tier 4: Traceability

Document	Content
Traceability Matrix	REQ → SDS → STD → Code → Tests mapping (auto-generated, top-level)

Related Documents

Document	Location	Purpose
SRS	output/srs/	Software Requirements Specification
STD	output/std/	Software Test Documentation
Ops Guide	output/guides/ops-deployment-guide.md	Deployment procedures
Dev Guide	output/guides/dev-testing-guide.md	Testing framework